Detailed information of SNP:
|
SNP ID:
sf0615410426(Gbrowse)
Chromosome: chr06 Position: 15410426 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1257 | 52.19% | 47.81% |
| All Indica | 658 | 12.92% | 87.08% |
| All Japonica | 482 | 98.76% | 1.24% |
| Aus | 63 | 88.89% | 11.11% |
| Indica I | 326 | 12.88% | 87.12% |
| Indica II | 171 | 9.94% | 90.06% |
| Indica Intermediate | 161 | 16.15% | 83.85% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 86 | 96.51% | 3.49% |
| Japonica Intermediate | 63 | 98.41% | 1.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615410426 | G->T | INTERGENIC | None |