Detailed information of SNP:
|
SNP ID:
sf0615514355(Gbrowse)
Chromosome: chr06 Position: 15514355 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 93.43% | 6.57% |
| All Indica | 781 | 88.73% | 11.27% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 87.37% | 12.63% |
| Indica II | 210 | 90.48% | 9.52% |
| Indica Intermediate | 199 | 89.45% | 10.55% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615514355 | C->T | LOC_Os06g27410(LOC_Os06g27410.1) | Synonymous |