Detailed information of SNP:
|
SNP ID:
sf0615544791(Gbrowse)
Chromosome: chr06 Position: 15544791 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 56.09% | 43.91% |
| All Indica | 785 | 93.12% | 6.88% |
| All Japonica | 497 | 5.23% | 94.77% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 366 | 94.26% | 5.74% |
| Indica II | 211 | 91.94% | 8.06% |
| Indica Intermediate | 208 | 92.31% | 7.69% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615544791 | A->G | INTERGENIC | None |