Detailed information of SNP:
|
SNP ID:
sf0615548889(Gbrowse)
Chromosome: chr06 Position: 15548889 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 56.92% | 43.08% |
| All Indica | 789 | 94.17% | 5.83% |
| All Japonica | 497 | 5.23% | 94.77% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 368 | 92.93% | 7.07% |
| Indica II | 211 | 96.68% | 3.32% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615548889 | G->A | LOC_Os06g27460(LOC_Os06g27460.1) | Non-Synonymous SNP |