Detailed information of SNP:
|
SNP ID:
sf0615549238(Gbrowse)
Chromosome: chr06 Position: 15549238 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1334 | 55.17% | 44.83% |
| All Indica | 758 | 87.07% | 12.93% |
| All Japonica | 497 | 5.43% | 94.57% |
| Aus | 29 | 72.41% | 27.59% |
| Indica I | 351 | 82.34% | 17.66% |
| Indica II | 210 | 91.90% | 8.10% |
| Indica Intermediate | 197 | 90.36% | 9.64% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 37 | 51.35% | 48.65% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615549238 | A->G | LOC_Os06g27460(LOC_Os06g27460.1) | INTRON |