Detailed information of SNP:
|
SNP ID:
sf0615550232(Gbrowse)
Chromosome: chr06 Position: 15550232 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1360 | 60.96% | 39.04% |
| All Indica | 747 | 96.25% | 3.75% |
| All Japonica | 495 | 4.85% | 95.15% |
| Aus | 63 | 96.83% | 3.17% |
| Indica I | 344 | 96.22% | 3.78% |
| Indica II | 200 | 97.50% | 2.50% |
| Indica Intermediate | 203 | 95.07% | 4.93% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 92 | 15.22% | 84.78% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615550232 | G->A | INTERGENIC | None |