Detailed information of SNP:
|
SNP ID:
sf0615626433(Gbrowse)
Chromosome: chr06 Position: 15626433 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 63.25% | 36.75% |
| All Indica | 798 | 97.37% | 2.63% |
| All Japonica | 497 | 5.43% | 94.57% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615626433 | G->T | INTERGENIC | None |