Detailed information of SNP:
SNP ID:
sf0615626433(Gbrowse)
Chromosome: chr06 Position: 15626433 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1415 | 63.25% | 36.75% |
All Indica | 798 | 97.37% | 2.63% |
All Japonica | 497 | 5.43% | 94.57% |
Aus | 67 | 98.51% | 1.49% |
Indica I | 374 | 97.59% | 2.41% |
Indica II | 213 | 98.12% | 1.88% |
Indica Intermediate | 211 | 96.21% | 3.79% |
Temperate Japonica | 335 | 1.49% | 98.51% |
Tropical Japonica | 94 | 17.02% | 82.98% |
Japonica Intermediate | 68 | 8.82% | 91.18% |
Group VI/Aromatic | 14 | 7.14% | 92.86% |
Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0615626433 | G->T | INTERGENIC | None |