Detailed information of SNP:
|
SNP ID:
sf0615634378(Gbrowse)
Chromosome: chr06 Position: 15634378 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1370 | 91.46% | 8.54% |
| All Indica | 751 | 85.49% | 14.51% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 354 | 82.77% | 17.23% |
| Indica II | 200 | 93.00% | 7.00% |
| Indica Intermediate | 197 | 82.74% | 17.26% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615634378 | A->G | INTERGENIC | None |