Detailed information of SNP:
|
SNP ID:
sf0615684728(Gbrowse)
Chromosome: chr06 Position: 15684728 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1372 | 53.79% | 46.21% |
| All Indica | 756 | 89.81% | 10.19% |
| All Japonica | 496 | 5.44% | 94.56% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 353 | 86.97% | 13.03% |
| Indica II | 199 | 91.96% | 8.04% |
| Indica Intermediate | 204 | 92.65% | 7.35% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 93 | 16.13% | 83.87% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 46.15% | 53.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615684728 | G->C | LOC_Os06g27700(LOC_Os06g27700.1) | INTRON |