Detailed information of SNP:
|
SNP ID:
sf0615836395(Gbrowse)
Chromosome: chr06 Position: 15836395 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1260 | 50.63% | 49.37% |
| All Indica | 650 | 20.77% | 79.23% |
| All Japonica | 495 | 95.76% | 4.24% |
| Aus | 63 | 7.94% | 92.06% |
| Indica I | 296 | 22.30% | 77.70% |
| Indica II | 185 | 18.92% | 81.08% |
| Indica Intermediate | 169 | 20.12% | 79.88% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 93 | 86.02% | 13.98% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 38 | 47.37% | 52.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615836395 | T->C | INTERGENIC | None |