Detailed information of SNP:
|
SNP ID:
sf0615853989(Gbrowse)
Chromosome: chr06 Position: 15853989 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 88.02% | 11.98% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 497 | 79.48% | 20.52% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615853989 | G->A | LOC_Os06g27940(LOC_Os06g27940.1) | Non-Synonymous SNP |