Detailed information of SNP:
|
SNP ID:
sf0615921180(Gbrowse)
Chromosome: chr06 Position: 15921180 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 59.86% | 40.14% |
| All Indica | 798 | 97.74% | 2.26% |
| All Japonica | 490 | 5.51% | 94.49% |
| Aus | 66 | 21.21% | 78.79% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 331 | 1.21% | 98.79% |
| Tropical Japonica | 91 | 17.58% | 82.42% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 37 | 54.05% | 45.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615921180 | C->G | INTERGENIC | None |