Detailed information of SNP:
|
SNP ID:
sf0616044273(Gbrowse)
Chromosome: chr06 Position: 16044273 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 55.15% | 44.85% |
| All Indica | 798 | 84.59% | 15.41% |
| All Japonica | 497 | 4.43% | 95.57% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 78.93% | 21.07% |
| Indica II | 212 | 91.04% | 8.96% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616044273 | T->C | INTERGENIC | None |