Detailed information of SNP:
|
SNP ID:
sf0616053264(Gbrowse)
Chromosome: chr06 Position: 16053264 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1397 | 77.02% | 22.98% |
| All Indica | 798 | 99.25% | 0.75% |
| All Japonica | 477 | 34.59% | 65.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 325 | 15.08% | 84.92% |
| Tropical Japonica | 86 | 87.21% | 12.79% |
| Japonica Intermediate | 66 | 62.12% | 37.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616053264 | G->C | LOC_Os06g28250(LOC_Os06g28250.1) | INTRON |