Detailed information of SNP:
|
SNP ID:
sf0616075793(Gbrowse)
Chromosome: chr06 Position: 16075793 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 98.94% | 1.06% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 488 | 97.75% | 2.25% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 99.70% | 0.30% |
| Tropical Japonica | 90 | 91.11% | 8.89% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616075793 | C->T | LOC_Os06g28310(LOC_Os06g28310.1) | Synonymous |