Detailed information of SNP:



SNP ID: sf0616106810(Gbrowse)

Chromosome: chr06

Position: 16106810
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1413 95.54% 4.46%
All Indica793 92.18% 7.82%
All Japonica497 100.00% 0.00%
Aus67 100.00% 0.00%
Indica I372 84.41% 15.59%
Indica II212 99.53% 0.47%
Indica Intermediate209 98.56% 1.44%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0616106810 T->C LOC_Os06g28340(LOC_Os06g28340.1) Non-Synonymous SNP