Detailed information of SNP:
|
SNP ID:
sf0616118657(Gbrowse)
Chromosome: chr06 Position: 16118657 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1377 | 69.64% | 30.36% |
| All Indica | 760 | 46.45% | 53.55% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 351 | 39.89% | 60.11% |
| Indica II | 207 | 40.58% | 59.42% |
| Indica Intermediate | 202 | 63.86% | 36.14% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616118657 | G->A | INTERGENIC | None |