Detailed information of SNP:
|
SNP ID:
sf0616128305(Gbrowse)
Chromosome: chr06 Position: 16128305 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1377 | 67.61% | 32.39% |
| All Indica | 796 | 98.12% | 1.88% |
| All Japonica | 461 | 8.46% | 91.54% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 314 | 4.78% | 95.22% |
| Tropical Japonica | 84 | 20.24% | 79.76% |
| Japonica Intermediate | 63 | 11.11% | 88.89% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616128305 | G->A | INTERGENIC | None |