Detailed information of SNP:
|
SNP ID:
sf0616168047(Gbrowse)
Chromosome: chr06 Position: 16168047 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 60.58% | 39.42% |
| All Indica | 794 | 91.31% | 8.69% |
| All Japonica | 497 | 5.23% | 94.77% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 371 | 92.18% | 7.82% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 210 | 86.67% | 13.33% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616168047 | T->C | LOC_Os06g28420(LOC_Os06g28420.1) | Synonymous |