Detailed information of SNP:
|
SNP ID:
sf0616196350(Gbrowse)
Chromosome: chr06 Position: 16196350 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 90.71% | 9.29% |
| All Indica | 779 | 83.70% | 16.30% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 82.83% | 17.17% |
| Indica II | 208 | 96.15% | 3.85% |
| Indica Intermediate | 204 | 72.55% | 27.45% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616196350 | C->T | INTERGENIC | None |