Detailed information of SNP:
|
SNP ID:
sf0616216406(Gbrowse)
Chromosome: chr06 Position: 16216406 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1307 | 93.65% | 6.35% |
| All Indica | 691 | 88.57% | 11.43% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 318 | 87.74% | 12.26% |
| Indica II | 186 | 96.77% | 3.23% |
| Indica Intermediate | 187 | 81.82% | 18.18% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616216406 | G->A | LOC_Os06g28520(LOC_Os06g28520.1) | INTRON |