Detailed information of SNP:
|
SNP ID:
sf0616243149(Gbrowse)
Chromosome: chr06 Position: 16243149 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1264 | 62.58% | 37.42% |
| All Indica | 698 | 94.56% | 5.44% |
| All Japonica | 451 | 6.87% | 93.13% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 325 | 96.31% | 3.69% |
| Indica II | 190 | 90.53% | 9.47% |
| Indica Intermediate | 183 | 95.63% | 4.37% |
| Temperate Japonica | 298 | 2.35% | 97.65% |
| Tropical Japonica | 89 | 19.10% | 80.90% |
| Japonica Intermediate | 64 | 10.94% | 89.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 61.11% | 38.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616243149 | T->C | INTERGENIC | None |