Detailed information of SNP:
|
SNP ID:
sf0616301184(Gbrowse)
Chromosome: chr06 Position: 16301184 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1290 | 82.02% | 17.98% |
| All Indica | 797 | 99.37% | 0.63% |
| All Japonica | 373 | 39.14% | 60.86% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 98.66% | 1.34% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 232 | 15.09% | 84.91% |
| Tropical Japonica | 83 | 92.77% | 7.23% |
| Japonica Intermediate | 58 | 58.62% | 41.38% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616301184 | A->G | LOC_Os06g28630(LOC_Os06g28630.1) | UTR_5_PRIME |