Detailed information of SNP:
|
SNP ID:
sf0616360028(Gbrowse)
Chromosome: chr06 Position: 16360028 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 57.40% | 42.60% |
| All Indica | 799 | 27.03% | 72.97% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 375 | 17.60% | 82.40% |
| Indica II | 213 | 35.68% | 64.32% |
| Indica Intermediate | 211 | 35.07% | 64.93% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616360028 | G->T | INTERGENIC | None |