Detailed information of SNP:
|
SNP ID:
sf0616369855(Gbrowse)
Chromosome: chr06 Position: 16369855 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1344 | 90.62% | 9.38% |
| All Indica | 754 | 85.41% | 14.59% |
| All Japonica | 489 | 99.18% | 0.82% |
| Aus | 49 | 83.67% | 16.33% |
| Indica I | 350 | 83.14% | 16.86% |
| Indica II | 200 | 86.50% | 13.50% |
| Indica Intermediate | 204 | 88.24% | 11.76% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 88 | 97.73% | 2.27% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616369855 | T->C | INTERGENIC | None |