Detailed information of SNP:
|
SNP ID:
sf0616469950(Gbrowse)
Chromosome: chr06 Position: 16469950 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1284 | 96.88% | 3.12% |
| All Indica | 666 | 93.99% | 6.01% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 293 | 90.10% | 9.90% |
| Indica II | 181 | 98.34% | 1.66% |
| Indica Intermediate | 192 | 95.83% | 4.17% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616469950 | G->A | INTERGENIC | None |