Detailed information of SNP:
|
SNP ID:
sf0616478822(Gbrowse)
Chromosome: chr06 Position: 16478822 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 87.32% | 12.68% |
| All Indica | 792 | 78.79% | 21.21% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 371 | 86.52% | 13.48% |
| Indica II | 212 | 74.06% | 25.94% |
| Indica Intermediate | 209 | 69.86% | 30.14% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616478822 | C->T | LOC_Os06g28880(LOC_Os06g28880.2) | UTR_5_PRIME |
| sf0616478822 | C->T | LOC_Os06g28880(LOC_Os06g28880.3) | INTRON |