Detailed information of SNP:
|
SNP ID:
sf0616488540(Gbrowse)
Chromosome: chr06 Position: 16488540 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1301 | 83.24% | 16.76% |
| All Indica | 686 | 69.39% | 30.61% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 319 | 73.35% | 26.65% |
| Indica II | 181 | 65.75% | 34.25% |
| Indica Intermediate | 186 | 66.13% | 33.87% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616488540 | A->G | INTERGENIC | None |