Detailed information of SNP:
|
SNP ID:
sf0616518929(Gbrowse)
Chromosome: chr06 Position: 16518929 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 54.69% | 45.31% |
| All Indica | 778 | 90.62% | 9.38% |
| All Japonica | 497 | 5.03% | 94.97% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 367 | 95.37% | 4.63% |
| Indica II | 206 | 91.26% | 8.74% |
| Indica Intermediate | 205 | 81.46% | 18.54% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616518929 | T->A | INTERGENIC | None |