Detailed information of SNP:
|
SNP ID:
sf0616526808(Gbrowse)
Chromosome: chr06 Position: 16526808 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 54.66% | 45.34% |
| All Indica | 791 | 22.25% | 77.75% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 373 | 16.62% | 83.38% |
| Indica II | 210 | 25.24% | 74.76% |
| Indica Intermediate | 208 | 29.33% | 70.67% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616526808 | A->T | INTERGENIC | None |