Detailed information of SNP:
|
SNP ID:
sf0616542693(Gbrowse)
Chromosome: chr06 Position: 16542693 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1314 | 54.57% | 45.43% |
| All Indica | 795 | 71.45% | 28.55% |
| All Japonica | 397 | 29.47% | 70.53% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 372 | 78.76% | 21.24% |
| Indica II | 212 | 67.45% | 32.55% |
| Indica Intermediate | 211 | 62.56% | 37.44% |
| Temperate Japonica | 260 | 2.31% | 97.69% |
| Tropical Japonica | 84 | 96.43% | 3.57% |
| Japonica Intermediate | 53 | 56.60% | 43.40% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616542693 | C->T | INTERGENIC | None |