Detailed information of SNP:
|
SNP ID:
sf0616572246(Gbrowse)
Chromosome: chr06 Position: 16572246 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1339 | 73.94% | 26.06% |
| All Indica | 719 | 52.85% | 47.15% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 337 | 46.29% | 53.71% |
| Indica II | 187 | 45.99% | 54.01% |
| Indica Intermediate | 195 | 70.77% | 29.23% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616572246 | C->T | INTERGENIC | None |