Detailed information of SNP:
|
SNP ID:
sf0616572495(Gbrowse)
Chromosome: chr06 Position: 16572495 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 57.37% | 42.63% |
| All Indica | 798 | 29.45% | 70.55% |
| All Japonica | 496 | 96.57% | 3.43% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 21.93% | 78.07% |
| Indica II | 213 | 34.74% | 65.26% |
| Indica Intermediate | 211 | 37.44% | 62.56% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 93 | 89.25% | 10.75% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616572495 | C->T | INTERGENIC | None |