Detailed information of SNP:
|
SNP ID:
sf0616573006(Gbrowse)
Chromosome: chr06 Position: 16573006 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 54.83% | 45.17% |
| All Indica | 799 | 25.78% | 74.22% |
| All Japonica | 497 | 94.97% | 5.03% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 22.13% | 77.87% |
| Indica II | 213 | 21.13% | 78.87% |
| Indica Intermediate | 211 | 36.97% | 63.03% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616573006 | C->T | INTERGENIC | None |