Detailed information of SNP:
|
SNP ID:
sf0616592100(Gbrowse)
Chromosome: chr06 Position: 16592100 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 97.38% | 2.62% |
| All Indica | 793 | 95.59% | 4.41% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 99.46% | 0.54% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616592100 | C->A | INTERGENIC | None |