Detailed information of SNP:
|
SNP ID:
sf0616627204(Gbrowse)
Chromosome: chr06 Position: 16627204 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1193 | 80.13% | 19.87% |
| All Indica | 581 | 61.27% | 38.73% |
| All Japonica | 496 | 98.59% | 1.41% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 245 | 55.92% | 44.08% |
| Indica II | 174 | 62.64% | 37.36% |
| Indica Intermediate | 162 | 67.90% | 32.10% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 91.67% | 8.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616627204 | C->T | LOC_Os06g29140(LOC_Os06g29140.1) | Non-Synonymous SNP |