Detailed information of SNP:
|
SNP ID:
sf0616627660(Gbrowse)
Chromosome: chr06 Position: 16627660 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1397 | 97.78% | 2.22% |
| All Indica | 778 | 96.40% | 3.60% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 364 | 96.15% | 3.85% |
| Indica II | 210 | 95.71% | 4.29% |
| Indica Intermediate | 204 | 97.55% | 2.45% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616627660 | T->C | LOC_Os06g29140(LOC_Os06g29140.1) | Synonymous |