Detailed information of SNP:
|
SNP ID:
sf0616659852(Gbrowse)
Chromosome: chr06 Position: 16659852 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1376 | 56.10% | 43.90% |
| All Indica | 780 | 89.62% | 10.38% |
| All Japonica | 491 | 4.48% | 95.52% |
| Aus | 52 | 30.77% | 69.23% |
| Indica I | 367 | 87.47% | 12.53% |
| Indica II | 210 | 90.48% | 9.52% |
| Indica Intermediate | 203 | 92.61% | 7.39% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 88 | 11.36% | 88.64% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616659852 | T->C | INTERGENIC | None |