Detailed information of SNP:
|
SNP ID:
sf0616705042(Gbrowse)
Chromosome: chr06 Position: 16705042 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 96.75% | 3.25% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 62 | 33.87% | 66.13% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616705042 | A->G | LOC_Os06g29260(LOC_Os06g29260.3) | INTRON |