Detailed information of SNP:
|
SNP ID:
sf0616708272(Gbrowse)
Chromosome: chr06 Position: 16708272 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1276 | 76.02% | 23.98% |
| All Indica | 659 | 55.54% | 44.46% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 286 | 53.15% | 46.85% |
| Indica II | 190 | 54.74% | 45.26% |
| Indica Intermediate | 183 | 60.11% | 39.89% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616708272 | C->T | LOC_Os06g29260(LOC_Os06g29260.3) | INTRON |
| sf0616708272 | C->T | LOC_Os06g29270(LOC_Os06g29270.1) | Synonymous |