Detailed information of SNP:
SNP ID:
sf0616721438(Gbrowse)
Chromosome: chr06 Position: 16721438 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1410 | 93.26% | 6.74% |
All Indica | 799 | 98.75% | 1.25% |
All Japonica | 497 | 84.71% | 15.29% |
Aus | 66 | 96.97% | 3.03% |
Indica I | 375 | 99.20% | 0.80% |
Indica II | 213 | 98.59% | 1.41% |
Indica Intermediate | 211 | 98.10% | 1.90% |
Temperate Japonica | 335 | 98.21% | 1.79% |
Tropical Japonica | 94 | 59.57% | 40.43% |
Japonica Intermediate | 68 | 52.94% | 47.06% |
Group VI/Aromatic | 9 | 88.89% | 11.11% |
Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0616721438 | G->A | LOC_Os06g29300(LOC_Os06g29300.1) | INTRON |