Detailed information of SNP:



SNP ID: sf0616721438(Gbrowse)

Chromosome: chr06

Position: 16721438
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1410 93.26% 6.74%
All Indica799 98.75% 1.25%
All Japonica497 84.71% 15.29%
Aus66 96.97% 3.03%
Indica I375 99.20% 0.80%
Indica II213 98.59% 1.41%
Indica Intermediate211 98.10% 1.90%
Temperate Japonica335 98.21% 1.79%
Tropical Japonica94 59.57% 40.43%
Japonica Intermediate68 52.94% 47.06%
Group VI/Aromatic9 88.89% 11.11%
Intermediate39 84.62% 15.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0616721438 G->A LOC_Os06g29300(LOC_Os06g29300.1) INTRON