Detailed information of SNP:
|
SNP ID:
sf0616722605(Gbrowse)
Chromosome: chr06 Position: 16722605 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1155 | 81.21% | 18.79% |
| All Indica | 564 | 70.74% | 29.26% |
| All Japonica | 482 | 99.59% | 0.41% |
| Aus | 61 | 24.59% | 75.41% |
| Indica I | 250 | 69.60% | 30.40% |
| Indica II | 168 | 72.62% | 27.38% |
| Indica Intermediate | 146 | 70.55% | 29.45% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 84 | 97.62% | 2.38% |
| Japonica Intermediate | 63 | 100.00% | 0.00% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 37 | 89.19% | 10.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616722605 | C->A | LOC_Os06g29300(LOC_Os06g29300.1) | Non-Synonymous SNP |