Detailed information of SNP:
|
SNP ID:
sf0616749119(Gbrowse)
Chromosome: chr06 Position: 16749119 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1346 | 55.79% | 44.21% |
| All Indica | 730 | 91.10% | 8.90% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 328 | 89.94% | 10.06% |
| Indica II | 206 | 91.75% | 8.25% |
| Indica Intermediate | 196 | 92.35% | 7.65% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 38 | 55.26% | 44.74% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616749119 | C->G | LOC_Os06g29320(LOC_Os06g29320.1) | Non-Synonymous SNP |