Detailed information of SNP:
|
SNP ID:
sf0616752928(Gbrowse)
Chromosome: chr06 Position: 16752928 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 92.64% | 7.36% |
| All Indica | 781 | 99.23% | 0.77% |
| All Japonica | 496 | 96.37% | 3.63% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 361 | 99.45% | 0.55% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 207 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616752928 | T->A | INTERGENIC | None |