Detailed information of SNP:
|
SNP ID:
sf0616756480(Gbrowse)
Chromosome: chr06 Position: 16756480 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1253 | 53.79% | 46.21% |
| All Indica | 662 | 16.77% | 83.23% |
| All Japonica | 482 | 97.30% | 2.70% |
| Aus | 56 | 94.64% | 5.36% |
| Indica I | 325 | 13.23% | 86.77% |
| Indica II | 166 | 13.25% | 86.75% |
| Indica Intermediate | 171 | 26.90% | 73.10% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 83 | 87.95% | 12.05% |
| Japonica Intermediate | 65 | 98.46% | 1.54% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 69.23% | 30.77% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616756480 | A->T | INTERGENIC | None |