Detailed information of SNP:
|
SNP ID:
sf0616818867(Gbrowse)
Chromosome: chr06 Position: 16818867 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 64.15% | 35.85% |
| All Indica | 799 | 98.12% | 1.88% |
| All Japonica | 496 | 5.24% | 94.76% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 67 | 8.96% | 91.04% |
| Group VI/Aromatic | 2 | 50.00% | 50.00% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616818867 | G->C | INTERGENIC | None |