Detailed information of SNP:
|
SNP ID:
sf0616843586(Gbrowse)
Chromosome: chr06 Position: 16843586 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 97.94% | 2.06% |
| All Indica | 797 | 99.75% | 0.25% |
| All Japonica | 487 | 95.07% | 4.93% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 89 | 78.65% | 21.35% |
| Japonica Intermediate | 64 | 93.75% | 6.25% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616843586 | G->A | INTERGENIC | None |