Detailed information of SNP:
|
SNP ID:
sf0616869222(Gbrowse)
Chromosome: chr06 Position: 16869222 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 60.20% | 39.80% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 497 | 5.63% | 94.37% |
| Aus | 66 | 21.21% | 78.79% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616869222 | G->A | INTERGENIC | None |