Detailed information of SNP:
|
SNP ID:
sf0616883774(Gbrowse)
Chromosome: chr06 Position: 16883774 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1158 | 82.90% | 17.10% |
| All Indica | 794 | 98.99% | 1.01% |
| All Japonica | 253 | 25.30% | 74.70% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 371 | 98.92% | 1.08% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 164 | 9.15% | 90.85% |
| Tropical Japonica | 51 | 60.78% | 39.22% |
| Japonica Intermediate | 38 | 47.37% | 52.63% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 32 | 96.88% | 3.12% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616883774 | T->C | INTERGENIC | None |