Detailed information of SNP:
|
SNP ID:
sf0616889332(Gbrowse)
Chromosome: chr06 Position: 16889332 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 58.77% | 41.23% |
| All Indica | 799 | 30.16% | 69.84% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 22.40% | 77.60% |
| Indica II | 213 | 35.21% | 64.79% |
| Indica Intermediate | 211 | 38.86% | 61.14% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0616889332 | A->T | INTERGENIC | None |